artemis (18.2.0+dfsg-3) unstable; urgency=medium

  * Raising Standards version to 4.6.1 (no change)
  * Updating d/watch after changes in the Github layout
  * Complying with htsjdk 3.0.2:
    - Adding a method definition to extend an abstract class
    - Adding a versioned dependency on libhtsjdk-java

 -- Pierre Gruet <pgt@debian.org>  Fri, 04 Nov 2022 11:10:17 +0100

artemis (18.2.0+dfsg-2) unstable; urgency=medium

  * Upload to unstable to accompany auto-biojava-live transition
    (Closes: #1009294)
  * Adding liblog4j1.2-java as a dependency of the binary package
  * Add salsa-ci file (routine-update)

 -- Pierre Gruet <pgt@debian.org>  Mon, 11 Apr 2022 16:39:21 +0200

artemis (18.2.0+dfsg-1) experimental; urgency=medium

  * New upstream version 18.2.0+dfsg
  * Using biojava-core.jar and Maven artifacts shipped by libbiojava-java
  * Adding versioned dependency on libbiojava-java with version 1:1.9.5+dfsg
  * Handling dependencies using maven:Depends substvar
  * Refreshing patches
  * Refreshing d/copyright
  * Fixing an incorrect specification of surefire argLine in pom.xml

 -- Pierre Gruet <pgt@debian.org>  Sun, 10 Apr 2022 22:47:24 +0200

artemis (18.1.0+dfsg-6) unstable; urgency=medium

  * Using -Xmx1946m instead of -Xm4g in the autopkgtest, so that it runs on
    32-bit arches

 -- Pierre Gruet <pgt@debian.org>  Sun, 07 Nov 2021 15:25:19 +0100

artemis (18.1.0+dfsg-5) unstable; urgency=medium

  * Upload to unstable, setting the package as Architecture: all seems to be
    OK in experimental
  * Setting the classpath in d/rules is not needed with a Maven build

 -- Pierre Gruet <pgt@debian.org>  Sat, 06 Nov 2021 15:29:24 +0100

artemis (18.1.0+dfsg-4) experimental; urgency=medium

  * Removing useless dependency on jarwrapper
  * Correcting Repository-* fields in d/u/metadata
  * Raising Standards version to 4.6.0 (no change)
  * Providing metainfo files
  * Setting Architecture to all as picard-tools is now Architecture: all
  * Removing the Lintian override about big /usr/share, useless as the package
    is now Architecture: all.

 -- Pierre Gruet <pgt@debian.org>  Fri, 05 Nov 2021 21:14:27 +0100

artemis (18.1.0+dfsg-3) unstable; urgency=medium

  * Changing homepage in d/control and manpages (Closes: #974680)
  * Standards version set to 4.5.1 (no changes needed)

 -- Pierre Gruet <pgtdebian@free.fr>  Fri, 04 Dec 2020 17:28:17 +0100

artemis (18.1.0+dfsg-2) unstable; urgency=medium

  * Marking current autopkgtest as superficial (Closes: #974437)
  * Adding an autopkgtest running some build tests

 -- Pierre Gruet <pgtdebian@free.fr>  Thu, 12 Nov 2020 21:44:47 +0100

artemis (18.1.0+dfsg-1) unstable; urgency=medium

  [ Andreas Tille ]
  * Fix edam syntax input+output is singular

  [ Michael R. Crusoe ]
  * forwarded a patch upstream

  [ Steffen Moeller ]
  * Added ref to conda
  * d/u/metadata: yamllint

  [ Pierre Gruet ]
  * New upstream version 18.1.0+dfsg
    Closes: #963430
  * Bumping Standards version to 4.5.0 (Rules-Requires-Root field added)
  * Depending on debhelper-compat
  * Updating Files-Excluded patterns in debian/copyright
  * Removing patches written for the old ant build
  * Adding metadata relative to Issues and Repository
  * Updating dependencies as Maven now replaces ant for the build
  * Updating debian/copyright as paths have changed
  * Building with Maven instead of ant
  * Fixing insecure uri and trailing whitespaces in debian/control
  * Replacing symlinks to jars with upstream-provided scripts
  * Updating and completing manpages of act and dnaplotter

 -- Pierre Gruet <pgtdebian@free.fr>  Sun, 06 Sep 2020 22:43:16 +0200

artemis (17.0.1+dfsg-2) unstable; urgency=medium

  * Add myself to Uploaders to have at least one human uploader after
    Afif removed himself (thanks for your previous work, Afif)
  * Standards-Version: 4.3.0
  * Add primitiv autopkgtest (no idea how to do better for gui programs)
  * Architecture: amd64 (since it depends from now amd64 only libpicard-java)
  * Use jarwrapper at least for executable that should be tested since
    directly calling jars does not work in autopkgtest environment

 -- Andreas Tille <tille@debian.org>  Fri, 08 Feb 2019 11:36:02 +0100

artemis (17.0.1+dfsg-1) unstable; urgency=medium

  * Team upload.
  * New upstream version
    Closes: #893184
  * debhelper 11
  * Point Vcs fields to salsa.debian.org
  * Standards-Version: 4.2.0
  * Class FTPSeekableStream should not be excluded
  * Update patch that prevents copying of non-existing files
  * d/rules: Use dh_auto_build instead of $(MAKE)
  * All JAR files named lower case according to Java policy
  * d/watch: use xz compression

 -- Andreas Tille <tille@debian.org>  Tue, 14 Aug 2018 13:59:24 +0200

artemis (16.0.17+dfsg-3) unstable; urgency=medium

  * Team upload

  [ Steffen Moeller ]
  * debian/upstream/metadata:
    - RRID -> SciCrunch
    - Added ref to OMICtools and bio.tools

  [ Fabian Klötzl ]
  * add batik-all.jar to classpath (Closes: #879384)

  [ Andreas Tille ]
  * Standards-Version: 4.1.1

 -- Fabian Klötzl <kloetzl@evolbio.mpg.de>  Mon, 23 Oct 2017 10:38:42 +0200

artemis (16.0.17+dfsg-2) unstable; urgency=medium

  * Team upload.
  * Depends: jarwrapper
    Closes: #859660

 -- Andreas Tille <tille@debian.org>  Sun, 14 May 2017 07:40:05 +0200

artemis (16.0.17+dfsg-1) unstable; urgency=medium

  [ Sascha Steinbiss ]
  * Team upload.
  * New upstream release.
  * Refresh patches.
  * Avoid use of deprecated SAM access method to fix FTBFS.
    Closes: 846671

  [ Andreas Tille ]
  * Cleanup patches and add DEP3 headers
  * debhelper 10
  * cme fix dpkg-control
  * d/watch: version=4

 -- Sascha Steinbiss <satta@debian.org>  Thu, 08 Dec 2016 09:39:12 +0100

artemis (16.0.0+dfsg-5) unstable; urgency=medium

  [ Steffen Moeller and Jon Ison ]
  * Introduced EDAM annotation

  [ Sascha Steinbiss ]
  * Bump Standards-Version
  * Use secure Vcs-*

  [ Sascha Steinbiss and Afif Elghraoui ]
  * Patch code to use new htsjdk API (Closes: #808851)

 -- Afif Elghraoui <afif@debian.org>  Sat, 26 Mar 2016 12:26:38 -0700

artemis (16.0.0+dfsg-4) unstable; urgency=high

  * Add dependency on libbiojava-java, a package required for
    Artemis to function.

 -- Afif Elghraoui <afif@ghraoui.name>  Fri, 20 Nov 2015 21:15:22 -0800

artemis (16.0.0+dfsg-3) unstable; urgency=medium

  [ Afif Elghraoui ]
  * Add upstream-contact and update project homepage
  * Add /usr/bin/bamview and a desktop entry for it
  * Note in the description that additional utilities are included

  [ Sascha Steinbiss ]
  * Rename methods to avoid name clash in Java 8 (Closes: #804091)

 -- Afif Elghraoui <afif@ghraoui.name>  Sun, 08 Nov 2015 12:51:37 -0800

artemis (16.0.0+dfsg-2) unstable; urgency=medium

  [ Afif Elghraoui ]
  * Rename artemis.desktop to avoid file name conflict (Closes: 803945)

  [ Emmanuel Bourg ]
  * Depend on libcommons-net-java instead of libcommons-net2-java

 -- Afif Elghraoui <afif@ghraoui.name>  Wed, 04 Nov 2015 21:19:08 -0800

artemis (16.0.0+dfsg-1) unstable; urgency=low

  * Initial release (Closes: #802739)

 -- Afif Elghraoui <afif@ghraoui.name>  Fri, 23 Oct 2015 00:15:20 -0700
